Package: doolkit 1.42.2
doolkit: Exploration of Dental Surface Topography
Tools for exploring the topography of 3d triangle meshes. The functions were developed with dental surfaces in mind, but could be applied to any triangle mesh of class 'mesh3d'. More specifically, 'doolkit' allows to isolate the border of a mesh, or a subpart of the mesh using the polygon networks method; crop a mesh; compute basic descriptors (elevation, orientation, footprint area); compute slope, angularity and relief index (Ungar and Williamson (2000) <https://palaeo-electronica.org/2000_1/gorilla/issue1_00.htm>; Boyer (2008) <doi:10.1016/j.jhevol.2008.08.002>), inclination and occlusal relief index or gamma (Guy et al. (2013) <doi:10.1371/journal.pone.0066142>), OPC (Evans et al. (2007) <doi:10.1038/nature05433>), OPCR (Wilson et al. (2012) <doi:10.1038/nature10880>), DNE (Bunn et al. (2011) <doi:10.1002/ajpa.21489>; Pampush et al. (2016) <doi:10.1007/s10914-016-9326-0>), form factor (Horton (1932) <doi:10.1029/TR013i001p00350>), basin elongation (Schum (1956) <doi:10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2>), lemniscate ratio (Chorley et al; (1957) <doi:10.2475/ajs.255.2.138>), enamel-dentine distance (Guy et al. (2015) <doi:10.1371/journal.pone.0138802>; Thiery et al. (2017) <doi:10.3389/fphys.2017.00524>), absolute crown strength (Schwartz et al. (2020) <doi:10.1098/rsbl.2019.0671>), relief rate (Thiery et al. (2019) <doi:10.1002/ajpa.23916>) and area-relative curvature; draw cumulative profiles of a topographic variable; and map a variable over a 3d triangle mesh.
Authors:
doolkit_1.42.2.tar.gz
doolkit_1.42.2.zip(r-4.5)doolkit_1.42.2.zip(r-4.4)doolkit_1.42.2.zip(r-4.3)
doolkit_1.42.2.tgz(r-4.4-any)doolkit_1.42.2.tgz(r-4.3-any)
doolkit_1.42.2.tar.gz(r-4.5-noble)doolkit_1.42.2.tar.gz(r-4.4-noble)
doolkit_1.42.2.tgz(r-4.4-emscripten)doolkit_1.42.2.tgz(r-4.3-emscripten)
doolkit.pdf |doolkit.html✨
doolkit/json (API)
# Install 'doolkit' in R: |
install.packages('doolkit', repos = c('https://nialsig.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nialsig/doolkit/issues
Last updated 11 months agofrom:d422e59495. Checks:OK: 1 NOTE: 4 ERROR: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 05 2024 |
R-4.5-win | NOTE | Nov 05 2024 |
R-4.5-linux | NOTE | Nov 05 2024 |
R-4.4-win | NOTE | Nov 05 2024 |
R-4.4-mac | ERROR | Nov 05 2024 |
R-4.3-win | NOTE | Nov 05 2024 |
R-4.3-mac | ERROR | Nov 05 2024 |
Exports:angularityarcarea2ddkborderdkcropdkmapdkorigindkprofiledksetviewdneelevhypsoinclinoedistopcopcrorientpoly.networkpolygon.networkrfirrateshape.indexslope
Dependencies:askpassbase64encbezierbslibcachemclassclassIntclicliprcodetoolscolorRampscolorspaceconcavemancpp11crayoncredentialscurlDBIdescdigestdoParalleldplyre1071evaluatefansifarverfastmapfontawesomeforeachfsgenericsgertggplot2ghgitcredsgluegtablehighrhtmltoolshtmlwidgetshttr2igraphiniisobanditeratorsjquerylibjsonliteKernSmoothknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeMorphomunsellnlmeopensslpillarpkgconfigproxypurrrR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenrglrlangrmarkdownrprojrootrstudioapiRvcgs2sassscalessfspsystibbletidyselecttinytextisunitsusethisutf8V8vctrsviridisLitewhiskerwithrwkxfunyamlzip
Readme and manuals
Help Manual
Help page | Topics |
---|---|
angularity | angularity |
Average-Relative Curvature (ARC) | arc |
2D surface area | area2d |
dkborder | dkborder |
crop a mesh | dkcrop |
3d topographic map | dkmap |
dkmodel | dkmodel |
dkorigin | dkorigin |
dkpongo | dkpongo |
cumulative profile, its slope and the area under its curve | dkprofile |
preset orientations | dksetview |
Dirichlet normal energy | dne |
elevation | elev |
hypso | hypso |
inclin | inclin |
Distance from outer enamel surface to enamel dentine junction | oedist |
orientation patch count | opc |
orientation patch count rotated | opcr |
orientation of polygons | orient |
Identify polygon networks | poly.network |
S4 class for polygon networks | polygon.network polygon.network-class |
relief index | rfi |
relief rate | rrate |
shape.index | shape.index |
slope | slope |